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27247-01 - Vorlesung: Computational Biology II: Sequence Modeling and Analysis (4 KP)
| Semester | Frühjahrsemester 2024 |
| Weitere Semesterveranstaltungen zu diesen KP |
27247-01 (Vorlesung) 27247-02 (Übung) |
| Angebotsmuster | Jedes Frühjahrsem. |
| Dozierende | Mihaela Zavolan (mihaela.zavolan@unibas.ch, BeurteilerIn) |
| Inhalt | This course will introduce students to fundamental problems in Bioinformatics/Computational Biology such as: - Evolution: Mathematical models for the evolution of DNA sequences. - Alignment and Phylogeny reconstruction: inferring evolutionary relationships between sequences. - Functional annotation: Finding genes and regulatory sequences in fully sequenced genomes. - Families of coding sequences: Hidden Markov models of protein domains - Gene expression networks: Inferring regulatory factors driving gene expression. Students should have a good understanding of calculus, linear algebra, combinatorics and algorithms and should be familiar with concepts of molecular biology. |
| Lernziele | Students learn about the basic problem domain of bioinformatics as well as a wide range of algorithms for sequence analysis. They will learn about the commonly used languages of bioinformatics (mostly Python) and will implement basic bioinformatics algorithms. |
| Weblink | https://adam.unibas.ch |
| Teilnahmevoraussetzungen | First year courses must be accomplished. Mathematical background is needed in calculus, linear algrebra, diffential equations. Knowledge about discrete mathematics, stochastic processes and fundamental computer science algorithms is a plus. Basic programming skills and basic understanding in physics, chemistry and molecular biology (cells, DNA, RNA, proteins, etc.) is necessary. |
| Unterrichtssprache | Englisch |
| Einsatz digitaler Medien | kein spezifischer Einsatz |
| Intervall | Wochentag | Zeit | Raum |
|---|---|---|---|
| wöchentlich | Donnerstag | 13.15-15.00 | Biozentrum, Seminarraum U1.195 |
Einzeltermine
| Datum | Zeit | Raum |
|---|---|---|
| Donnerstag 29.02.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 07.03.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 14.03.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 21.03.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 28.03.2024 | 13.15-15.00 Uhr | Ostern |
| Donnerstag 04.04.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 11.04.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 18.04.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 25.04.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 02.05.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 09.05.2024 | 13.15-15.00 Uhr | Auffahrt |
| Donnerstag 16.05.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 23.05.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Donnerstag 30.05.2024 | 13.15-15.00 Uhr | Biozentrum, Seminarraum U1.195 |
| Module |
Cycle E: Computational and Systems Biology (Masterstudium: Molekularbiologie) Modul: Applications and Related Topics (Bachelorstudium: Computer Science) Modul: Computational Biology (Bachelorstudium: Computational Sciences) Modul: Computational Biology (Bachelorstudium: Computational Sciences (Studienbeginn vor 01.08.2023)) Modul: Computational Biology (Bachelorstudium: Computational Sciences) Modul: Computational Biology (Bachelorstudium: Computational Sciences) Modul: Computational Biology (Bachelorstudium: Computational Sciences) Modul: Computational Methods (Bachelorstudium: Computational Sciences) Modul: Computational Methods (Bachelorstudium: Computational Sciences) Modul: Computational Methods (Bachelorstudium: Computational Sciences) Modul: Computational Methods (Bachelorstudium: Computational Sciences) Modul: Computational Sciences II (Bachelorstudium: Computational Sciences (Studienbeginn vor 01.08.2023)) |
| Prüfung | Lehrveranst.-begleitend |
| Hinweise zur Prüfung | Exam: 30.05.2024, 13:15-15:00h, Biozentrum, U1.195 |
| An-/Abmeldung zur Prüfung | Anm.: Belegen Lehrveranstaltung; Abm.: stornieren |
| Wiederholungsprüfung | keine Wiederholungsprüfung |
| Skala | 1-6 0,5 |
| Belegen bei Nichtbestehen | beliebig wiederholbar |
| Zuständige Fakultät | Philosophisch-Naturwissenschaftliche Fakultät, studiendekanat-philnat@unibas.ch |
| Anbietende Organisationseinheit | Departement Biozentrum |