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45038-01 - Lecture with practical courses: Introduction to R/Bioconductor (2 CP)
| Semester | fall semester 2016 |
| Course frequency | Every fall sem. |
| Lecturers |
Sarah Carl (sarah.carl@unibas.ch)
Florian Geier (florian.geier@unibas.ch) Robert Ivanek (robert.ivanek@unibas.ch, Assessor) Helene Pascale Royo (helenepascale.royo@unibas.ch) Michael Stadler (michael.stadler@unibas.ch) |
| Content | The R/Bioconductor framework is the most widely used analysis tool for sequence based bioinformatics. The lecture gives an overview of typical Bioconductor based analysis pipelines including: - Microarray and NGS data processing - Differential gene expression analysis - Working with sequence and annotation packages - Programmatic access to public databases - Visualization of genomic data Each lecture is organized around one analysis question using publicly available data. It consist of 1 hour lecture and 1 hour hands on practical. Participants should bring along their laptops. Basic R knowledge is of an advantage. |
| Language of instruction | English |
| Use of digital media | No specific media used |
| Interval | Weekday | Time | Room |
|---|
No dates available. Please contact the lecturer.
| Modules |
Cycle E: Computational and Systems Biology (Master Molecular Biology) Doctorate Biochemistry: Recommendations (PhD subject: Biochemistry) Doctorate Biophysics: Recommendations (PhD subject: Biophysics) Doctorate Cell Biology: Recommendations (PhD subject: Cell Biology) Doctorate Computational Biology: Recommendations (PhD subject: Computational Biology) Doctorate Genetics: Recommendations (PhD subject: Genetics) Doctorate Microbiology: Recommendations (PhD subject: Microbiology) Doctorate Molecular Biology: Recommendations (PhD subject: Molecular Biology) Doctorate Neurobiology: Recommendations (PhD subject: Neurobiology) Doctorate Pharmacology: Recommendations (PhD subject: Pharmacology) Doctorate Structural Biology: Recommendations (PhD subject: Structural Biology) |
| Assessment format | continuous assessment |
| Assessment registration/deregistration | Reg.: course registration, dereg: cancel course registration |
| Repeat examination | no repeat examination |
| Scale | Pass / Fail |
| Repeated registration | as often as necessary |
| Responsible faculty | Faculty of Science, studiendekanat-philnat@unibas.ch |
| Offered by | Departement Biozentrum |