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74535-01 - Lecture with practical courses: From Data to Physical Models in Biology (4 CP)
| Semester | spring semester 2025 |
| Course frequency | Every spring sem. |
| Lecturers |
Richard Neher (richard.neher@unibas.ch, Assessor)
Erik van Nimwegen (erik.vannimwegen@unibas.ch) |
| Content | Over the past 3 decades, biology has become a data rich science and making sense of ever increasing data volumes has become a central challenge. The data are gathered from biological systems that operate by the laws of physics. Analysis of these data should respect the underlying physical constraints and ideally inform us about the processes that generate and shape the data. This course will introduce mathematical and physical concepts and methods relevant to the analysis and interpretation of often noisy data on biological systems. Students are expected to have a solid background in physical and mathematical sciences as well as numerical analysis. Specifically, the course will cover · Introduction to probability and information theory · Exploratory data analysis (clustering, dimensionality reduction) · Exact and approximate techniques to infer complex models from data · Elements of stochastic processes · Elements of dynamics systems · Physical limits to biological information processing |
| Learning objectives | data analysis grounded in principles of statistical physics and probability theory understanding the nature of noise and stochasticity in biological system |
| Comments | |
| Weblink | Adam Link |
| Admission requirements | Analysis I&II Linear Algebra I&II Probability theory Thermodynamics and Statistical Physics Programming (Python or an equivalent programming language) and numerical methods |
| Course application | Reg./dereg.: course registr./cancel registr. via services |
| Language of instruction | English |
| Use of digital media | Online, optional |
| Interval | Weekday | Time | Room |
|---|---|---|---|
| wöchentlich | Tuesday | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| wöchentlich | Tuesday | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Comments |
Dienstag, 14.15-16.00 / Tuesday, 14.15-16.00 (Vorlesung) Dienstag, 16.15-17.00 / Tuesday, 16.15-17.00 (Übungen) |
Dates
| Date | Time | Room |
|---|---|---|
| Tuesday 18.02.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 18.02.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 25.02.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 25.02.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 04.03.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 04.03.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 11.03.2025 | 14.15-16.00 | Fasnachstferien |
| Tuesday 11.03.2025 | 16.15-17.00 | Fasnachstferien |
| Tuesday 18.03.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 18.03.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 25.03.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 25.03.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 01.04.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 01.04.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 08.04.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 08.04.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 15.04.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 15.04.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 22.04.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 22.04.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 29.04.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 29.04.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 06.05.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 06.05.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 13.05.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 13.05.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 20.05.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 20.05.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Tuesday 27.05.2025 | 14.15-16.00 | Biozentrum, Seminarraum U1.197 |
| Tuesday 27.05.2025 | 16.15-17.00 | Biozentrum, Seminarraum U1.193 |
| Modules |
Modul: Foundations in Physics of Life (Master's Studies: Physics of Life) |
| Assessment format | continuous assessment |
| Assessment details | The grade is based on a written exam |
| Assessment registration/deregistration | Reg.: course registration, dereg: cancel course registration |
| Repeat examination | no repeat examination |
| Scale | 1-6 0,5 |
| Repeated registration | as often as necessary |
| Responsible faculty | Faculty of Science, studiendekanat-philnat@unibas.ch |
| Offered by | Departement Biozentrum |