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| Semester | spring semester 2021 |
| Course frequency | Every spring sem. |
| Lecturers |
Ferda Canbaz (ferda.canbaz@unibas.ch)
Azhar Zam (azhar.zam@unibas.ch, Assessor) |
| Content | Introduction: Nature of light, fundamentals of light-matter interactions, photobiology, photophysics, photochemistry, laser and light sources, laser safety. Light-Tissue Interactions: Photochemical interaction, biostimulation, photo-thermal effects, photoablation, plasma-induced ablation, photo-acoustic effects, photon transport, monte carlo simulations, adding doubling method. Spectroscopy: Absorption, diffuse reflectance, fluorescence, Raman and tissue spectroscopy Biosensors: Principles of optical biosensing, optical geometries for biosensors and biosensing methods. Bioimaging Principles and Techniques: Introduction to optical microscopy, principle of image formation, amplitude and phase microscopy, polarization, fluorescence and confocal microscopy, optical diffraction tomography and new microscopic techniques. 2D Bioimaging: Endoscopy, videomicroscopy, diffuse reflectance, laser Doppler perfusion imaging, laser speckle perfusion imaging, . 3D Bioimaging: Optical coherence tomography, polarimetry, diffuse optical tomography, photothermal imaging, photoacoustic imaging and optical biopsy. Applications Laser and Optics in Medicine and Biology: Biophotonics applications in medicine, laser tweezers and scissors, microarray and microfluidic technologies for genomics and proteomics, flow cytometry, bioluminescence, bio-nanophotonics, opto-genetics, tissue engineering with light and data analysis in Biophotonics. |
| Bibliography | Recommended Reading: Prasad, P.N., “Introduction to Biophotonics”, (Wiley-VCH), 2003 Wang, LV and Wu HI, Biomedical Optics, Principles and Imaging, (Wiley-VCH), 2007, Demchenko, A P "Introduction to Fluorescence Sensing", Springer, 2008 Popp,Tuchin, Chiou, Heinemann (Editors) Handbook of Biophotonics, 3 Volume Set, (Wiley-VCH), 2012. Leahy, M.J. editor, Microcirculation Imaging, (Wiley-VCH), 2012. |
| Weblink | DBE |
| Language of instruction | English |
| Use of digital media | No specific media used |
| Interval | Weekday | Time | Room |
|---|---|---|---|
| wöchentlich | Wednesday | 09.15-12.00 | - Online Präsenz - |
| Comments | Location Practical Work: Gewerbestrasse 12, DBE 12.03.001. |
| Date | Time | Room |
|---|---|---|
| Wednesday 03.03.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 10.03.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 17.03.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 24.03.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 31.03.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 07.04.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 14.04.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 21.04.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 28.04.2021 | 09.15-12.00 | - Online Präsenz -, -- |
| Wednesday 05.05.2021 | 09.15-12.00 | - Online Präsenz -, Practical Part: Gewerbestrasse 12, DBE 12.03.001 |
| Wednesday 12.05.2021 | 09.15-12.00 | - Online Präsenz -, Practical Part: Gewerbestrasse 12, DBE 12.03.001 |
| Wednesday 19.05.2021 | 09.15-12.00 | - Online Präsenz -, Practical Part: Gewerbestrasse 12, DBE 12.03.001 |
| Wednesday 26.05.2021 | 09.15-12.00 | - Online Präsenz -, Practical Part: Gewerbestrasse 12, DBE 12.03.001 |
| Wednesday 02.06.2021 | 09.15-12.00 | - Online Präsenz -, Practical Part: Gewerbestrasse 12, DBE 12.03.001 |
| Monday 21.06.2021 | 09.00-17.00 | - Online Präsenz -, -- |
| Tuesday 22.06.2021 | 09.00-17.00 | - Online Präsenz -, -- |
| Modules |
Doctorate Biomedical Engineering: Recommendations (PhD subject: Biomedical Engineering) Module: Biomaterials Science and Nanotechnology (Master's Studies: Biomedical Engineering) Module: Image-Guided Therapy (Master's Studies: Biomedical Engineering) |
| Assessment format | record of achievement |
| Assessment details | Attendance 10%, Practical Work 20%, Quiz 20% and Final oral Exam 50% |
| Assessment registration/deregistration | Reg.: course registration, dereg: cancel course registration |
| Repeat examination | one repetition, best attempt counts |
| Scale | 1-6 0,5 |
| Repeated registration | as often as necessary |
| Responsible faculty | Faculty of Medicine |
| Offered by | Departement Biomedical Engineering (DBE) |