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| Semester | fall semester 2020 |
| Course frequency | Every fall sem. |
| Lecturers |
Timm Maier (timm.maier@unibas.ch, Assessor)
Adam Mazur (adam.mazur@unibas.ch) Michael Podvinec (michael.podvinec@unibas.ch) |
| Content | Day 1: Analysis of structural and biophysical data with Python. Numerical Python modules: NumPy, SciPy, Pandas. Data visualization: Matplotlib Day 2: Working with protein structures and sequences: Biopython, OpenStructure and PyMOL Day 3: Practical session, ideally with application to participants' research projects The course will cover the essentials of practical Python programming for structural biology. It is designed for PhD and MSc students who already have basic knowledge in Python programming and would like to learn how to enhance their skills to solve realistic cases in the field of structural biology. The focus will be put on acquiring practical knowledge about Python modules relevant to structural biology, numerical analysis and visualization. The course days consist of an introductory presentation on the basic concepts and best practices, followed by practical exercises, during which participants can apply the acquired skills. |
| Bibliography | https://adam.unibas.ch/login.php |
| Weblink | Graduate Teaching Program |
| Admission requirements | Prerequisites: basic experience in Python programming (e.g. course E7: Programming for Life Sciences 43513). The course must be fully attended, otherwise the CPs can not be awarded. PhD students only. |
| Course application | Angelika Klarer Klingelbergstrasse 70 4056 Basel angie.klarer@unibas.ch |
| Language of instruction | English |
| Use of digital media | No specific media used |
| Interval | Weekday | Time | Room |
|---|
No dates available. Please contact the lecturer.
| Modules |
Cycle I: Practical and Experimental Skills (Master's Studies: Molecular Biology) Doctorate Biochemistry: Recommendations (PhD subject: Biochemistry) Doctorate Biophysics: Recommendations (PhD subject: Biophysics) Doctorate Cell Biology: Recommendations (PhD subject: Cell Biology) Doctorate Computational Biology: Recommendations (PhD subject: Computational Biology) Doctorate Genetics: Recommendations (PhD subject: Genetics) Doctorate Microbiology: Recommendations (PhD subject: Microbiology) Doctorate Molecular Biology: Recommendations (PhD subject: Molecular Biology) Doctorate Neurobiology: Recommendations (PhD subject: Neurobiology) Doctorate Pharmacology: Recommendations (PhD subject: Pharmacology) Doctorate Structural Biology: Recommendations (PhD subject: Structural Biology) Module Specialisation: Molecular Biology (Master's Studies: Nanosciences) |
| Assessment format | continuous assessment |
| Assessment registration/deregistration | Reg.: course registration, dereg: cancel course registration |
| Repeat examination | no repeat examination |
| Scale | Pass / Fail |
| Repeated registration | as often as necessary |
| Responsible faculty | Faculty of Science, studiendekanat-philnat@unibas.ch |
| Offered by | Departement Biozentrum |